de.hpi.fgis.dude.similarityfunction.contentbased.impl.simmetrics
Class NeedlemanWunschFunction

java.lang.Object
  de.hpi.fgis.dude.similarityfunction.AbstractSimilarityFunction
      de.hpi.fgis.dude.similarityfunction.contentbased.ContentBasedSimilarityFunction<T>
          de.hpi.fgis.dude.similarityfunction.contentbased.impl.simmetrics.SimmetricsFunction<NeedlemanWunschFunction,uk.ac.shef.wit.simmetrics.similaritymetrics.NeedlemanWunch>
              de.hpi.fgis.dude.similarityfunction.contentbased.impl.simmetrics.NeedlemanWunschFunction

All Implemented Interfaces:

SimilarityFunction, StringSimilarity, AutoJsonable

public class NeedlemanWunschFunction
extends SimmetricsFunction<NeedlemanWunschFunction,uk.ac.shef.wit.simmetrics.similaritymetrics.NeedlemanWunch>

NeedlemanWunschFunction compares two DuDeObject s based on the Needleman Wunch Distance of the given attribute.

Author:

Ziawasch Abedjan, Arvid Heise, Matthias Pohl

Nested Class Summary

Nested classes/interfaces inherited from interface de.hpi.fgis.dude.similarityfunction.SimilarityFunction

SimilarityFunction.SimilarityValidationState

Constructor Summary

protected	NeedlemanWunschFunction() Internal constructor for Jsonable deserialization.
	NeedlemanWunschFunction(uk.ac.shef.wit.simmetrics.similaritymetrics.costfunctions.AbstractSubstitutionCost costFunction, int attrIndex, String... defaultAttr) Initializes the NeedlemanWunschFunction.
	NeedlemanWunschFunction(uk.ac.shef.wit.simmetrics.similaritymetrics.costfunctions.AbstractSubstitutionCost costFunction, String... defaultAttr) Initializes the NeedlemanWunschFunction.
	NeedlemanWunschFunction(float costGap, uk.ac.shef.wit.simmetrics.similaritymetrics.costfunctions.AbstractSubstitutionCost costFunction, int attrIndex, String... defaultAttr) Initializes the NeedlemanWunschFunction.
	NeedlemanWunschFunction(float costGap, uk.ac.shef.wit.simmetrics.similaritymetrics.costfunctions.AbstractSubstitutionCost costFunction, String... defaultAttr) Initializes the NeedlemanWunschFunction.
	NeedlemanWunschFunction(float costGap, int attrIndex, String... defaultAttr) Initializes the NeedlemanWunschFunction.
	NeedlemanWunschFunction(float costGap, String... defaultAttr) Initializes the NeedlemanWunschFunction.
	NeedlemanWunschFunction(int attrIndex, String... defaultAttr) Initializes the NeedlemanWunschFunction.
	NeedlemanWunschFunction(String... defaultAttr) Initializes the NeedlemanWunschFunction.

Method Summary

Methods inherited from class de.hpi.fgis.dude.similarityfunction.contentbased.impl.simmetrics.SimmetricsFunction

compareAtomicValues, getSimilarity

Methods inherited from class de.hpi.fgis.dude.similarityfunction.contentbased.ContentBasedSimilarityFunction

addAttribute, calculateSimilarity, calculateSimilarity, equals, getAttribute, hashCode, ignoreCapitalization, ignoringCapitalizationEnabled, setCompareArrayArrayStrategy, setCompareArrayAtomicStrategy, setCompareArrayRecordStrategy, setCompareRecordAtomicStrategy, setCompareRecordRecordStrategy

Methods inherited from class de.hpi.fgis.dude.similarityfunction.AbstractSimilarityFunction

getLastValidationState, getSimilarity, setValidationState

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NeedlemanWunschFunction

protected NeedlemanWunschFunction()

Internal constructor for Jsonable deserialization.

NeedlemanWunschFunction

public NeedlemanWunschFunction(String... defaultAttr)

Initializes the NeedlemanWunschFunction.

Parameters:

defaultAttr - The default attribute.

NeedlemanWunschFunction

public NeedlemanWunschFunction(int attrIndex,
                               String... defaultAttr)

Initializes the NeedlemanWunschFunction.

Parameters:

attrIndex - The index of the default attribute. This parameter is used to select specific values of an array.

defaultAttr - The default attribute.

NeedlemanWunschFunction

public NeedlemanWunschFunction(float costGap,
                               String... defaultAttr)

Initializes the NeedlemanWunschFunction.

Parameters:

costGap - The cost of a gap.

defaultAttr - The default attribute.

NeedlemanWunschFunction

public NeedlemanWunschFunction(float costGap,
                               int attrIndex,
                               String... defaultAttr)

Initializes the NeedlemanWunschFunction.

Parameters:

costGap - The cost of a gap.

attrIndex - The index of the default attribute. This parameter is used to select specific values of an array.

defaultAttr - The default attribute.

NeedlemanWunschFunction

public NeedlemanWunschFunction(uk.ac.shef.wit.simmetrics.similaritymetrics.costfunctions.AbstractSubstitutionCost costFunction,
                               String... defaultAttr)

Initializes the NeedlemanWunschFunction.

Parameters:

costFunction - The cost function to use.

defaultAttr - The default attribute.

NeedlemanWunschFunction

public NeedlemanWunschFunction(uk.ac.shef.wit.simmetrics.similaritymetrics.costfunctions.AbstractSubstitutionCost costFunction,
                               int attrIndex,
                               String... defaultAttr)

Initializes the NeedlemanWunschFunction.

Parameters:

costFunction - The cost function to use.

attrIndex - The index of the default attribute. This parameter is used to select specific values of an array.

defaultAttr - The default attribute.

NeedlemanWunschFunction

public NeedlemanWunschFunction(float costGap,
                               uk.ac.shef.wit.simmetrics.similaritymetrics.costfunctions.AbstractSubstitutionCost costFunction,
                               String... defaultAttr)

Initializes the NeedlemanWunschFunction.

Parameters:

costGap - The cost of a gap.

costFunction - The cost function to use.

defaultAttr - The default attribute.

NeedlemanWunschFunction

public NeedlemanWunschFunction(float costGap,
                               uk.ac.shef.wit.simmetrics.similaritymetrics.costfunctions.AbstractSubstitutionCost costFunction,
                               int attrIndex,
                               String... defaultAttr)

Initializes the NeedlemanWunschFunction.

Parameters:

costGap - The cost of a gap.

costFunction - The cost function to use.

attrIndex - The index of the default attribute. This parameter is used to select specific values of an array.

defaultAttr - The default attribute.