Hasso-Plattner-Institut
HPI Digital Health Center
  
 

Dr.-Ing. Matthieu-P. Schapranow

Working Group Leader and Scientific Manager Digital Health Innovations

Click to view a high-res picture of Matthieu-P. Schapranow
  Phone: +49 (331) 55 09 - 1331
  Fax: +49 (331) 55 09 - 163
  E-Mail: schapranow(at)hpi.de,
schapranow(at)ieee.org
  Organization: Hasso Plattner Insitute
  Address: Rudolf-Breitscheid-Str. 187 Potsdam, Brandenburg, 14482 Germany
  Room: Hasso Plattner Institute Campus III, Room: G2.-2.15
  Profiles: XING, LinkedIn, Plaxo, University of Potsdam, Research Gate

Committees and Memberships

Awards

Dr.-Ing. Matthieu-P. Schapranow is Leader of the Working Group "In-Memory Computing for Digital Health" and Scientific Manager Digital Health Innovations at the Hasso Plattner Institute (HPI), Visiting Scientist at the Mass. Veterans Epidemiology Research and Information Center (MAVERIC) of the U.S. Department of Veterans Affairs. He is a valued member of the Berlin Cancer Society contributing to the Federal Association for Information Technology, Telecommunications and New Media (BITKOM) and the Global Alliance for Genomics and Health. Dr.-Ing. Schapranow holds a PhD as well as the MSc and BSc degrees in Software Engineering. He was named as one of the top Elite Researchers in Life Sciences in 2016 and one of Germany's Top 10 Junior Scientists in 2015. Furthermore, he was honored with the Personalized Medicine Convention Award 2015, the European Life Science Award in 2014, and the Innovation Award of the German Capital Region in 2012. Together with Prof. Dr. Plattner, he published the textbook "High-Performance In-Memory Genome Data Analysis" in 2013.

The full biography including high-res picture download are available in German and English.

Further Interests

  • Genomics
  • Life Sciences
  • Parallelization
  • Innovative Applications

Selected Patents

  • System and method for genomic data processing with an in-memory database system and real-time analysis (US20140214333, EP2759953)
  • Efficient genomic read alignment in an in-memory database (US20140214334, EP2759952)
  • Transparent control of access invoking real-time analysis of the query history (EP2667337)
  • Read more

Selected Presentations

Books

2014 (1)

  1. Hasso Plattner, Matthieu-P. Schapranow: High-Performance In-Memory Genome Data Analysis: How In-Memory Database Technology Accelerates Personalized Medicine, In-Memory Data Management Research, ISBN: 978-3-319-03034-0, 2014 BibTeX

2013 (1)

  1. Matthieu-P. Schapranow: Real-time Security Extensions for EPCglobal Networks: Case Study for the Pharmaceutical Industry, In-Memory Data Management Research, Springer, ISBN: 978-3-642-36342-9, 2013 BibTeX

 

 

Publications

2019

  • Freitas da Cruz, H., Bergner, B., Konak, O., Schneider, F., Bode, P., Lempert, C., Schapranow, M.: MORPHER – A Platform to Support Modeling of Outcome and Risk Prediction in Health Research. Proceedings of the 19th IEEE International Conference on Bioinformatics and Biomedicine. , Athens, Greece (2019).
     
  • Freitas da Cruz, H., Horschig, S., Nusshag, C., Schapranow, M.-P.: Knowledge Distillation from Machine Learning Models for Prediction of Hemodialysis Outcomes. International Journal On Advances in Life Sciences. 11, 33-43 (2019).
     
  • Slosarek, T., Kraus, M., Schapranow, M.-P., Boettinger, E.: Qualitative Comparison of Selected Indel Detection Methods for RNA-Seq Data. International Work-Conference on Bioinformatics and Biomedical Engineering. bll. 166-177. Springer (2019).
     
  • Freitas da Cruz, H., Schneider, F., Schapranow, M.-P.: Prediction of Acute Kidney Injury in Cardiac Surgery Patients: Interpretation using Local Interpretable Model-agnostic Explanations. Proceedings of the 12th International Conference on Biomedical Engineering Systems and Technologies. bll. 380-387. , Prague, Czech Republic (2019).
     
  • Konak, O., Freitas Da Cruz, H., Thiele, M., Golla, D., Schapranow, M.-P.: An Information and Communication Platform Supporting Analytics for Elderly Care. 5th International Conference on Information for Ageing Well, Communication Technologies e Health (2019).
     
  • Freitas da Cruz, H., Pfahringer, B., Schneider, F., Meyer, A., Schapranow, M.-P.: External Validation of a “Black-Box” Clinical Predictive Model in Nephrology: Can Interpretability Methods Help Illuminate Performance Differences? Proceedings of 17th Conference on Artificial Intelligence in Medicine. bll. 191-201 (2019).
     

2018

  • Freitas da Cruz, H., Horschig, S., Nusshag, C., Schapranow, M.-P.: Prediction of Patient Outcomes after Renal Replacement Therapy in Intensive Care. Proceedings of the 3rd International Conference on Informatics and Assistive Technologies for Health-Care, Medical Support and Wellbeing (2018).
     
  • Freitas da Cruz, H., Gebhardt, M., Becher, F., Schapranow, M.-P.: Interactive Data Exploration Supporting Elderly Care Planning. Proceedings of the 10th International Conference on eHealth, Telemedicine, and Social Medicine (2018).
     
  • Kraus, M., Hesse, G., Slosarek, T., Danner, M., Kesar, A., Bhushan, A., Schapranow, M.-P.: DEAME-Differential Expression Analysis Made Easy. Heterogeneous Data Management, Polystores, and Analytics for Healthcare. bl. 162--174. Springer (2018).
     

2017

  • Schapranow, M.-P., Brauer, J., Plattner, H.: The Data Donation Pass: Enabling Sovereign Control of Personal Healthcare Data. Proceedings of the World Congress in Computer Science, Computer Engineering, and Applied Computing. CSCE (2017).
     
  • Kraus, M., Schapranow, M.-P.: An In-Memory Database Platform for Systems Medicine. Proceedings of the International Conference on Bioinformatics and Computational Biology. bl. 93--100. The International Society for Computers and Their Applications (ISCA) (2017).
     
  • Schapranow, M.-P.: Die digitale Transformation mitgestalten — Der Datenspendeausweis: Souveräner Umgang mit persönlichen Gesundheitsdaten. Plattform Life Sciences. 38--39 (2017).
     

2016

  • Schapranow, M.-P., Kraus, M., Danner, M., Plattner, H.: IMDBfs: Bridging the Gap between In-Memory Database Technology and File-Based Tools for Life Sciences. Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine. bl. 1133--1139. IEEE (2016).
     
  • Schapranow, M.-P., Uflacker, M., Sariyar, M., Semler, S., Fichte, J., Schielke, D., Ekinci, K., Zahn, T.: Towards An Integrated Health Research Process: A Cloud-based Approach. Proceedings of The IEEE International Conference on Big Data. 2813--2818 (2016).
     
  • Schapranow, M.-P.: Datenspendeausweis für ­Bürger: Ein Plädoyer für mündige Patienten, die die eigenen Gesundheitsdaten am besten verstehen. Management & Krankenhaus. (2016).
     
  • Schapranow, M.-P.: Die In-Memory-Technologie in der personalisierten Medizin, https://news.sap.com/germany/die-in-memory-technologie-in-der-personalisierten-medizin/, (2016).
     

2015

  • Schapranow, M.-P., Kraus, M., Perscheid, C., Bock, C., Liedtke, F., Plattner, H.: The Medical Knowledge Cockpit: Real-time Analysis of Big Medical Data Enabling Precision Medicine. Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine (BIBM). bll. 770-775 (2015).
     
  • Schapranow, M.-P., Perscheid, C., Plattner, H.: IT-Aided Business Process Enabling Real-time Analysis of Candidates for Clinical Trials. Proceedings of the 4th International Conference on Global Health Challenges. bll. 67-73. IARIA (2015).
     
  • Schapranow, M.-P., Perscheid, C., Wachsmann, A., Siegert, M., Bock, C., Horschig, F., Liedke, F., Brauer, J., Plattner, H.: A Federated In-Memory Database System For Life Sciences. Proceedings of the 9th International Workshop on Business Intelligence for the Real Time Enterprise (BIRTE) (2015).
     
  • Denecke, K., Mall, S., Fähnrich, C., Perscheid, C., Adeoye, O.O., Benzler, J., Claus, H., Kirchner, G., Richter, R., Schapranow, M.-P., Schwarz, N., Reigl, L., Tom-Aba, D., Gidado, S., Waziri, N.E., Uflacker, M., Krause, G., Poggensee, G.: „Surveillance and Outbreak Response Management and Analysis System (SORMAS)“ ermöglicht Kontrolle von Ebola-Infizierten in Westafrika. 10. Jahrestagung der Deutschen Gesellschaft für Epidemiologie (DGEpi) (2015).
     
  • Fähnrich, C., Denecke, K., Adeoye, O., Benzler, J., Claus, H., Kirchner, G., Mall, S., Richter, R., Schapranow, M.-P., Schwarz, N.G., Tom-Aba, D., Uflacker, M., Poggensee, G., Krause, G.: Surveillance and Outbreak Response Management System (SORMAS) to support the control of the Ebola virus disease outbreak in West Africa. Euro Surveillance. (2015).
     
  • Fähnrich, C., Schapranow, M.-P., Plattner, H.: Facing the Genome Data Deluge: Efficiently Identifying Genetic Variants with In-Memory Database Technology. Proceedings of the ACM Symposium on Applied Computing (2015).
     

2014

  • Schapranow, M.-P., Klinghammer, K., Fähnrich, C., Plattner, H.: An Optimized Research Process for Real-time Drug Response Analysis. The Third International Conference on Global Health Challenges (2014).
     
  • Schapranow, M.-P., Klinghammer, K., Fähnrich, C., Plattner, H.: In-Memory Technology Enables Interactive Drug Response Analysis. 16th International Conference on e-Health Networking, Applications and Services (Healthcom 2014) (2014).
     
  • Herbst, K., Fähnrich, C., Neves, M., Schapranow, M.-P.: Applying In-Memory Technology for Automatic Template Filling in the Clinical Domain. CLEF 2014 Evaluation Labs and Workshop, Online Working Notes (2014).
     
  • Schapranow, M.-P., Plattner, H.: High-Performance In-Memory Genome Data Analysis: How In-Memory Database Technology Accelerates Personalized Medicine. Springer (2014).
     
  • Haeger, F., Schapranow, M.-P., Fähnrich, C., Ziegler, E., Plattner, H.: In-Memory Computing Enabling Real-time Genome Data Analysis. International Journal on Advances in Life Sciences, Vol 6, Nr 1-2. (2014).
     
  • Fähnrich, C., Schapranow, M.-P., Plattner, H.: Towards Integrating the Detection of Genetic Variants into an In-Memory Database. Proceedings of the International Conference on Big Data (2014).
     

2013

  • Schapranow, M.-P., Plattner, H., Tosun, C., Regenbrecht, C.: Mobile Real-time Analysis of Patient Data for Advanced Decision Support in Personalized Medicine. The 5th International Conference on eHealth, Telemedicine, and Social Medicine, pp. 129-136 (2013).
     
  • Schapranow, M.-P.: Real-time Security Extensions for EPCglobal Networks: Case Study for the Pharmaceutical Industry. In-Memory Data Management Research, Springer (2013).
     
  • Haeger, F., Plattner, H., Schapranow, M.-P.: High-Performance In-Memory Genome Project: A Platform for Integrated Real-Time Genome Data Analysis. Proceedings of the 2nd International Conference on Global Health Challenges. bll. 5-10 (2013).
     
  • Schapranow, M.-P., Meinel, C., Plattner, H.: Big Data soll Genom-Analysen schneller voranbringen. Krankenhaus-IT Journal, p. 26. (2013).
     
  • Schapranow, M.-P., Plattner, H., Meinel, C.: Applied In-Memory Technology for High-Throughput Genome Data Processing and Real-time Analysis. System on Chip (!SoC) Devices in Telemedicine from !LABoC to High Resolution Images, pp. 35-42 (2013).
     
  • Schapranow, M.-P., Plattner, H.: In-Memory Technology Enables History-Based Access Control for RFID-Aided Supply Chains. The Secure Information Society: Ethical, Legal and Political Challenges, pp. 187-213 (2013).
     
  • Schapranow, M.-P., Meinel, C., Plattner, H.: Applied In-Memory Technology to High Throughput Genome Data Processing. Proceedings of XXI Winter Course of the CATAI (CATAI 2013). bll. 35-42. , Canary Islands, Spain (2013).
     
  • Schapranow, M.-P.: Krebsdatenbank auf Tablet und Smartphone. Best Practice Wireless in der Hauptstadtregion Berlin-Brandenburg, pp. 48-49 (2013).
     
  • Schapranow, M.-P., Plattner, H.: HIG – An In-memory Database Platform Enabling Real-time Analyses of Genome Data. Proceedings of the International Conference on Big Data. bll. 691-696 (2013).
     

2012

  • Müller, J., Schapranow, M.-P., Zeier, A., Plattner, H.: Secure RFID-Enablement in Modern Companies: A Case Study of the Pharmaceutical Industry. Handbook of Research on Industrial Informatics and Manufacturing Intelligence: Innovations and Solutions, pp. 507-539, IGI Global (2012).
     
  • Schapranow, M.-P., Meinel, C., Plattner, H.: Datenbanktechnologie beflügelt personalisierte Medizin. Laborwelt Nr. 4/2012, 13. Jahrgang. (2012).
     
  • Plattner, H., Meinel, C., Schapranow, M.-P.: Blitzschnelle Datenanalysen für die personalisierte Medizin der Zukunft – Interdisziplinäre Impulse aus Potsdam und Berlin. Themenbroschüre 2012 Gesundheitsstandort Berlin-Brandenburg. (2012).
     

2011

  • Schapranow, M.-P., Zeier, A., Plattner, H., Müller, J., Lorenz, M.: Discovery Services in the EPC Network. Designing and Deploying RFID Applications, pp. 109-130, INTECH Press (2011).
     
  • Zeier, A., Plattner, H., Schapranow, M.-P., Müller, J.: Costs of Authentic Pharmaceuticals: Research on Qualitative and Quantitative Aspects of Enabling Anti-counterfeiting in RFID-aided Supply Chains. Personal and Ubiquitous Computing, Volume 16, Issue 3. 271-289 (2011).
     
  • Schapranow, M.-P., Lorenz, M., Zeier, A., Plattner, H.: License-based Access Control in EPCglobal Networks. The 7th European Workshop on RFID Systems and Technologies, pp. 1-7 (2011).
     
  • Schapranow, M.-P., Zeier, A., Plattner, H.: A Formal Model for Enabling RFID in Pharmaceutical Supply Chains. 44th Hawaii International Conference on System Sciences (HICSS). IEEE (2011).
     
  • Schapranow, M.-P., Zeier, A., Leupold, F., Schubotz, T.: Securing EPCglobal Object Name Service -- Privacy Enhancements for Anti-counterfeiting. 2nd International Conference on Intelligent Systems, Modeling and Simulation, pp. 332-337 (2011).
     
  • Schapranow, M.-P., Müller, J., Zeier, A., Plattner, H.: What are Authentic Pharmaceuticals Worth? Designing and Deploying RFID Applications, pp. 204-220, INTECH Press (2011).
     
  • Lorenz, M., Müller, J., Schapranow, M.-P., Zeier, A.: A Distributed EPC Discovery Service based on Peer-to-peer Technology. Proceedings of the RFID SysTech 2011, 7th European Workshop on Smart Objects: Systems, Technologies and Applications, Dresden. bll. 1 - 7. VDE (2011).
     
  • Schapranow, M.-P., Zeier, A., Plattner, H.: Security Extensions for Improving Data Security of Event Repositories in EPCglobal Networks. The 9th International Conference on Embedded and Ubiquitous Computing pp. 213-220 (2011).
     
  • Schapranow, M.-P., Fähnrich, C., Zeier, A., Plattner, H.: Simulation of RFID-aided Supply Chains: Case Study of the Pharmaceutical Supply Chain. Third International Conference on Computational Intelligence, Modelling and Simulation, pp. 340-345 (2011).
     

2010

  • Schapranow, M.-P., Kühne, R., Zeier, A.: Real-Time Billing in Smart Grid Infrastructures. Power and Energy Student Summit 2010 - Integration of Renewable Energies into the Grid (2010).
     
  • Müller, J., Schapranow, M.-P., Pöpke, C., Urbat, M., Zeier, A., Plattner, H.: Best Practices for Rigorous Evaluation of RFID Software Components. Proceedings of the 6th European Workshop on RFID Systems and Technologies (RFID !SysTech'10), Ciudad Real, Spain (2010).
     
  • Schapranow, M.-P., Kühne, R., Zeier, A.: Enabling Real-Time Charging for Smart Grid Infrastructures using In-Memory Databases. 1st IEEE LCN Workshop on Smart Grid Networking Infrastructure (2010).
     
  • Schapranow, M.-P., Nagora, M., Zeier, A.: CoMoSeR: Cost Model for Security-Enhanced RFID-Aided Supply Chains. The 18th International Conference on Software, Telecommunication and Computer Networks, pp. 11-16 (2010).
     
  • Schapranow, M.-P., Geller, F., Lorenz, M., Müller, J., Kowark, T., Zeier, A.: Assessment of Communication Protocols in the EPC Network: Replacing Textual SOAP and XML with Binary Google Protocol Buffers Encoding. 17th IEEE International Conference on Industrial Engineering and Engineering Management (IE&EM), Xiamen, China (2010).
     
  • Schapranow, M.-P., Zeier, A., Plattner, H.: A Dynamic Mutual RFID Authentication Model Preventing Unauthorized Third Party Access. The 4th International Conference on Network and System Security, , pp. 371-376 (2010).
     
  • Schapranow, M.-P., Müller, J., Zeier, A., Plattner, H.: RFID Event Data Processing -- An Architecture for Storing and Searching. Proceedings of the 4th International Workshop on RFID Technology - Concepts, Applications, Challenges, Funchal, Madeira, Portugal (2010).
     

2009

  • Müller, J., Schapranow, M.-P., Helmich, M., Enderlein, S., Zeier, A.: RFID Middleware as a Service - Enabling Small and Medium-sized Enterprises to Participate in the EPC Network. 16th International Conference on Industrial Engineering and Engineering Management (IE&EM), Beijing, China (2009).
     
  • Schapranow, M.-P., Müller, J., Zeier, A., Plattner, H.: Security Aspects in Vulnerable RFID-Aided Supply Chains. Proceedings of the 5th European Workshop on RFID Systems and Technologies, Bremen (2009).
     
  • Zeier, A., Schapranow, M.-P., Krüger, J., Uflacker, M., Müller, J.: noFilis CrossTalk 2.0 as Device Management Solution, Experiences while Integrating RFID Hardware into SAP Auto-ID Infrastructure. Proceedings of the 16th International Conference on Industrial Engineering and Engineering Management (IE&EM), Beijing, China (2009).
     
  • Schapranow, M.-P., Müller, J., Krüger, J., Hofmann, P., Zeier, A.: Integration of RFID Technology is a Key Enabler for Demand-Driven Supply Network. The IUP Journal of Supply Chain Management, Volume 6, Nos. 3 & 4, pp. 57-74. (2009).
     
  • Borovskiy, V., Müller, J., Schapranow, M.-P., Zeier, A.: Ensuring Service Backwards Compatibility with Generic Web Services. Proceedings of ICSE 2009, PESOS Workshop, Vancouver, Canada (2009).
     
  • Müller, J., Faust, M., Schwalb, D., Schapranow, M.-P., Zeier, A., Plattner, H.: A Software as a Service RFID Middleware for Small and Medium-sized Enterprises. Proceedings of the 5th European Workshop on RFID Systems and Technologies (RFID !SysTech'09), Bremen, Germany (2009).
     
  • Schapranow, M.-P., Krüger, J., Borovskiy, V., Zeier, A., Plattner, H.: Data Loading & Caching Strategies in Service-Oriented Enterprise Applications. Proceedings of IEEE Congress on Services (SERVICES 2009), Los Angeles, CA, USA (2009).
     
  • Schapranow, M.-P., Müller, J., Enderlein, S., Helmich, M., Zeier, A.: Low-Cost Mutual RFID Authentication Model Using Predefined Password Lists. The 16th International Conference on Industrial Engineering and Engineering Management, pp. 889-893 (2009).
     
  • Schapranow, M.-P., Zeier, A., Borovskiy, V., Müller, J.: Binary Search Tree Visualization Algorithm. 16th International Conference on Industrial Engineering and Engineering Management (IE&EM), Beijing, China (2009).
     

2008

  • Schapranow, M.-P., Grund, M., Krüger, J., Schaffner, J., Bog, A.: Combining Advantages - Unified Data Stores in Global Enterprises. IEEE Symposium on Advanced Management of Information for Globalized Enterprises (AMIGE'08), Tianjin, China (2008).
     
  • Schapranow, M.-P., Krüger, J., Müller, J.: Smart Enterprise Widgets: Little Helpers with a Big Impact. SAP INFO (online). (2008).
     
  • Krüger, J., Grund, M., Schaffner, J., Schapranow, M.-P., Bog, A.: Shared Table Access Pattern Analysis for Multi-Tenant Applications. IEEE Symposium on Advanced Management of Information for Globalized Enterprises (AMIGE'08), Tianjin, China (2008).
     
  • Grund, M., Schaffner, J., Schapranow, M.-P., Bog, A., Krüger, J.: Operational Reporting Using Navigational SQL. IEEE Symposium on Advanced Management of Information for Globalized Enterprises (AMIGE'08), Tianjin, China (2008).
     
  • Schapranow, M.-P., Krüger, J.: HPI Students Learn with SAP Enterprise Services. SAP INFO (online). (2008).
     

Master's Thesis

Miscellaneous