Hasso-Plattner-Institut
  
Hasso-Plattner-Institut
Prof. Dr. h.c. Hasso Plattner
  
 

Programme

 

The proceedings of the SMBM 2016 is available in CEUR: http://ceur-ws.org/Vol-1650/

All sessions will take place in the lecture hall 3 (HS 3), please check our annotated Google Maps. The coffee breaks, lunches and poster sessions will take place in the lobby.

The posters should be in the A1 format (portrait).

 

Thursday, Aug 4th

10:30Registration & coffee
11:10Goran Nenadic: Opening
Session 1 (chair: Goran Nenadic)
11:20Maryam Habibi: Performance of Gene Name Recognition Tools on Patents
11:50Maria Skeppstedt: Marker words for negation and speculation in health records and consumer reviews
12:10Oliver Gros: Diagnostic Free Text Analysis in Biobanks with CRIP.CodEx: Automated Matching of Classifications
12:30

Lunch

13:40Keynote speaker: Ulf Leser - Translational Text Mining
Session 2 (chair: Fabio Rinaldi)
14:40Harry Freitas Da Cruz: Early detection of acute kidney injury with Bayesian networks
15:10Alex Bravo: Text mining and expert curation to develop a database on psychiatric diseases and their genes
Session 3: Flash talks (chair Fabio Rinaldi)
15:30Goran Nenadic: Healtex: the UK healthcare text analytics research network
15:40Anja Perlich: Transferring semi-structured, patient-centered progress notes into structured clinical documents
15:50Mina Rezaei: Medical Image Analysis by Deep Learning
16:00Coffee break & poster session

 

Friday, Aug 5th

9:30Registration
10:00Welcome
10:10Keynote speaker: Laura Furlong - Structuring Knowledge on Human Diseases: Challenges and Opportunities
11:10Coffee break
Session 4 (chair Karin Verspoor)
11:40Luis Núñez-Gómez: Simplifying Drug Package Leaflets
12:10Sérgio Matos: A curation pipeline and web-services for PDF documents
12:30Roland Roller: A Light-weight & Robust System for Clinical Concept Disambiguation
13:00Lunch
Session 5 (chair Laura Furlong)
14:00Lenz Furrer: Using a Hybrid Approach for Entity Recognition in the Biomedical Domain
14:30Karin Verspoor: Exploiting Tree Kernels for high performance Chemical Induced Disease relation extraction
14:50José Camilla Sammartino: Annotation process, guidelines and text corpus of small non-coding RNA molecules: the MiNCor for microRNA annotations
15:10Mariana Neves: TextAI: Enhancing TextAE with Intelligent Annotation Support
15:40Coffee break and poster session
Session 6: Flash talks (chair Sergio Matos)
17:00Fabio Rinaldi: A brief overview of recent BioCreative challenges
17:10Milena Kraus: Medicate Medical Search Engine
17:20Karin Verspoor: Supervised learning for detection of duplicates in genomics sequence databases
17:30Mariana Neves: Overview of the Biomedical Task at WMT
17:40Closing remarks
20:00Social Event: boat trip (including dinner) on the lakes of Potsdam
23:00End of social event in Potsdam city center

 

 

Accepted papers

Long papers

Maryam Habibi, David Luis Wiegandt, Florian Schmedding and Ulf Leser. Performance of Gene Name Recognition Tools on Patents

Marco Basaldella, Lenz Furrer, Carlo Tasso and Fabio Rinaldi. Using a Hybrid Approach for Entity Recognition in the Biomedical Domain

Isabel Segura Bedmar, Luis Núñez-Gómez, Paloma Martínez Fernández and Maribel Quiroz. Simplifying Drug Package Leaflets

Harry Freitas Da Cruz, Bastien Grasnick, Henriette Dinger, Frank Bier and Christoph Meinel. Early detection of acute kidney injury with Bayesian networks

Thomas Hahn, Hidayat Rahman and Richard Segall. Disease Named Entity Recognition Using Conditional Random Fields

Short papers

Nagesh Panyam Chandrasekarasastry, Karin Verspoor, Trevor Cohn and Ramamohanarao Kotagiri. Exploiting Tree Kernels for high performance Chemical Induced Disease relation extraction

Alba Gutiérrez Sacristán, Àlex Bravo, Marta Portero, Olga Valverde, Antonio Armario, M.C. Blanco-Gandía, Adriana Farré, Lierni Fernández-Ibarrondo, Francina Fonseca, Jesús Giraldo, Angela Leis, Anna Mané, M.A. Mayer, Sandra Montagud-Romero, Roser Nadal, Jordi Ortiz, Francisco Javier Pavon, Ezequiel Perez, Marta Rodríguez-Arias, Antonia Serrano, Marta Torrens, Vincent Warnault, Ferran Sanz and Laura I. Furlong. Text mining and expert curation to develop a database on psychiatric diseases and their genes

Jose Camilla Sammartino, Martin Krallinger and Alfonso Valencia. Annotation process, guidelines and text corpus of small non-coding RNA molecules: the MiNCor for microRNA annotations

Maria Skeppstedt, Carita Paradis and Andreas Kerren. Marker words for negation and speculation in health records and consumer reviews

Oliver Gros and Reinhard Thasler. Diagnostic Free Text Analysis in Biobanks with CRIP.CodEx: Automated Matching of Classifications

André Santos, Sérgio Matos and José Luis Oliveira. A curation pipeline and web-services for PDF documents

Demo papers

Maximilian Grundke, Johannes Jasper, Mariya Perchyk, Jan Philipp Sachse, Ralf Krestel and Mariana Neves. TextAI: Enhancing TextAE with Intelligent Annotation Support

Dirk Weissenborn, Roland Roller, Feiyu Xu, Hans Uszkoreit and Enrique Garcia Perez. A Light-weight & Robust System for Clinical Concept Disambiguation