Hasso-Plattner-Institut
Prof. Dr. h.c. Hasso Plattner
  
 

Dr.-Ing. Matthieu-P. Schapranow

Program Manager E-Health & Life Sciences

Click to view a high-res picture of Matthieu-P. Schapranow
  Phone: +49 (331) 55 09 - 1331
  Fax: +49 (331) 55 09 - 579
  E-Mail: ,
  Organization: Hasso Plattner Insitute
  Address: August-Bebel-Str. 88 Potsdam, Brandenburg, 14482 Germany
  Room: Hasso Plattner Institute Campus II, Villa, Room: V-1.01
  Profiles: XING, LinkedIn, Plaxo, University of Potsdam, Research Gate

Committees and Memberships

Awards

Dr.-Ing. Matthieu-P. Schapranow is Program Manager E-Health & Life Sciences at the HPI, Visiting Scientist at the Mass. Veterans Epidemiology Research and Information Center (MAVERIC) of the U.S. Department of Veterans Affairs. He is a valued member of the Berlin Cancer Society contributing to the Federal Association for Information Technology, Telecommunications and New Media (BITKOM) and the Global Alliance for Genomics and Health. Dr.-Ing. Schapranow holds a PhD as well as the MSc and BSc degrees in Software Engineering. He was named as one of the top Elite Researchers in Life Sciences in 2016 and one of Germany's Top 10 Junior Scientists in 2015. Furthermore, he was honored with the Personalized Medicine Convention Award 2015, the European Life Science Award in 2014, and the Innovation Award of the German Capital Region in 2012. Together with Prof. Dr. Plattner, he published the textbook "High-Performance In-Memory Genome Data Analysis" in 2013.

The full biography including high-res picture download are available in German and English.

Further Interests

  • Genomics
  • Life Sciences
  • Parallelization
  • Innovative Applications

Selected Patents

  • System and method for genomic data processing with an in-memory database system and real-time analysis (US20140214333, EP2759953)
  • Efficient genomic read alignment in an in-memory database (US20140214334, EP2759952)
  • Transparent control of access invoking real-time analysis of the query history (EP2667337)
  • Read more

Selected Presentations

Books

2014 (1)

  1. Hasso Plattner, Matthieu-P. Schapranow: High-Performance In-Memory Genome Data Analysis: How In-Memory Database Technology Accelerates Personalized Medicine, In-Memory Data Management Research, ISBN: 978-3-319-03034-0, 2014 BibTeX

2013 (1)

  1. Matthieu-P. Schapranow: Real-time Security Extensions for EPCglobal Networks: Case Study for the Pharmaceutical Industry, In-Memory Data Management Research, Springer, ISBN: 978-3-642-36342-9, 2013 BibTeX

 

 

Publications

  • Schapranow, M.-P.: Die digitale Transformation mitgestalten — Der Datenspendeausweis: Souveräner Umgang mit persönlichen Gesundheitsdaten. Plattform Life Sciences. 38--39 (2017).
     
  • Schapranow, M.-P., Brauer, J., Plattner, H.: The Data Donation Pass: Enabling Sovereign Control of Personal Healthcare Data. Proceedings of the World Congress in Computer Science, Computer Engineering, and Applied Computing. CSCE (2017).
     
  • Kraus, M., Schapranow, M.-P.: An In-Memory Database Platform for Systems Medicine. Proceedings of the International Conference on Bioinformatics and Computational Biology. bl. 93--100. The International Society for Computers and Their Applications (ISCA) (2017).
     
  • Schapranow, M.-P.: Die In-Memory-Technologie in der personalisierten Medizin, https://news.sap.com/germany/die-in-memory-technologie-in-der-personalisierten-medizin/, (2016).
     
  • Schapranow, M.-P.: Datenspendeausweis für ­Bürger: Ein Plädoyer für mündige Patienten, die die eigenen Gesundheitsdaten am besten verstehen. Management & Krankenhaus. (2016).
     
  • Schapranow, M.-P., Uflacker, M., Sariyar, M., Semler, S., Fichte, J., Schielke, D., Ekinci, K., Zahn, T.: Towards An Integrated Health Research Process: A Cloud-based Approach. Proceedings of IEEE International Conference on Big Data. bl. 2813--2818. IEEE (2016).
     
  • Schapranow, M.-P., Kraus, M., Danner, M., Plattner, H.: IMDBfs: Bridging the Gap between In-Memory Database Technology and File-Based Tools for Life Sciences. Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine. bl. 1133--1139. IEEE (2016).
     
  • Denecke, K., Mall, S., Fähnrich, C., Perscheid, C., Adeoye, O.O., Benzler, J., Claus, H., Kirchner, G., Richter, R., Schapranow, M.-P., Schwarz, N., Reigl, L., Tom-Aba, D., Gidado, S., Waziri, N.E., Uflacker, M., Krause, G., Poggensee, G.: „Surveillance and Outbreak Response Management and Analysis System (SORMAS)“ ermöglicht Kontrolle von Ebola-Infizierten in Westafrika. 10. Jahrestagung der Deutschen Gesellschaft für Epidemiologie (DGEpi) (2015).
     
  • Fähnrich, C., Denecke, K., Adeoye, O., Benzler, J., Claus, H., Kirchner, G., Mall, S., Richter, R., Schapranow, M.-P., Schwarz, N.G., Tom-Aba, D., Uflacker, M., Poggensee, G., Krause, G.: Surveillance and Outbreak Response Management System (SORMAS) to support the control of the Ebola virus disease outbreak in West Africa. Euro Surveillance. (2015).
     
  • Schapranow, M.-P., Perscheid, C., Plattner, H.: IT-Aided Business Process Enabling Real-time Analysis of Candidates for Clinical Trials. Proceedings of the 4th International Conference on Global Health Challenges. bll. 67-73. IARIA (2015).
     
  • Fähnrich, C., Schapranow, M.-P., Plattner, H.: Facing the Genome Data Deluge: Efficiently Identifying Genetic Variants with In-Memory Database Technology. Proceedings of the ACM Symposium on Applied Computing (2015).
     
  • Schapranow, M.-P., Kraus, M., Perscheid, C., Bock, C., Liedtke, F., Plattner, H.: The Medical Knowledge Cockpit: Real-time Analysis of Big Medical Data Enabling Precision Medicine. Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine (BIBM). bll. 770-775 (2015).
     
  • Schapranow, M.-P., Perscheid, C., Wachsmann, A., Siegert, M., Bock, C., Horschig, F., Liedke, F., Brauer, J., Plattner, H.: A Federated In-Memory Database System For Life Sciences. Proceedings of the 9th International Workshop on Business Intelligence for the Real Time Enterprise (BIRTE) (2015).
     
  • Schapranow, M.-P., Klinghammer, K., Fähnrich, C., Plattner, H.: An Optimized Research Process for Real-time Drug Response Analysis. The Third International Conference on Global Health Challenges (2014).
     
  • Schapranow, M.-P., Klinghammer, K., Fähnrich, C., Plattner, H.: In-Memory Technology Enables Interactive Drug Response Analysis. 16th International Conference on e-Health Networking, Applications and Services (Healthcom 2014) (2014).
     
  • Schapranow, M.-P., Plattner, H.: High-Performance In-Memory Genome Data Analysis: How In-Memory Database Technology Accelerates Personalized Medicine. Springer (2014).
     
  • Haeger, F., Schapranow, M.-P., Fähnrich, C., Ziegler, E., Plattner, H.: In-Memory Computing Enabling Real-time Genome Data Analysis. International Journal on Advances in Life Sciences, Vol 6, Nr 1-2. (2014).
     
  • Herbst, K., Fähnrich, C., Neves, M., Schapranow, M.-P.: Applying In-Memory Technology for Automatic Template Filling in the Clinical Domain. CLEF 2014 Evaluation Labs and Workshop, Online Working Notes (2014).
     
  • Fähnrich, C., Schapranow, M.-P., Plattner, H.: Towards Integrating the Detection of Genetic Variants into an In-Memory Database. Proceedings of the International Conference on Big Data (2014).
     
  • Schapranow, M.-P.: Krebsdatenbank auf Tablet und Smartphone. Best Practice Wireless in der Hauptstadtregion Berlin-Brandenburg, pp. 48-49 (2013).
     
  • Schapranow, M.-P., Plattner, H.: In-Memory Technology Enables History-Based Access Control for RFID-Aided Supply Chains. The Secure Information Society: Ethical, Legal and Political Challenges, pp. 187-213 (2013).
     
  • Schapranow, M.-P., Plattner, H.: HIG – An In-memory Database Platform Enabling Real-time Analyses of Genome Data. Proceedings of the International Conference on Big Data. bll. 691-696 (2013).
     
  • Schapranow, M.-P., Meinel, C., Plattner, H.: Big Data soll Genom-Analysen schneller voranbringen. Krankenhaus-IT Journal, p. 26. (2013).
     
  • Schapranow, M.-P., Plattner, H., Meinel, C.: Applied In-Memory Technology for High-Throughput Genome Data Processing and Real-time Analysis. System on Chip (!SoC) Devices in Telemedicine from !LABoC to High Resolution Images, pp. 35-42 (2013).
     
  • Schapranow, M.-P.: Real-time Security Extensions for EPCglobal Networks: Case Study for the Pharmaceutical Industry. In-Memory Data Management Research, Springer (2013).
     
  • Schapranow, M.-P., Plattner, H., Tosun, C., Regenbrecht, C.: Mobile Real-time Analysis of Patient Data for Advanced Decision Support in Personalized Medicine. The 5th International Conference on eHealth, Telemedicine, and Social Medicine, pp. 129-136 (2013).
     
  • Haeger, F., Plattner, H., Schapranow, M.-P.: High-Performance In-Memory Genome Project: A Platform for Integrated Real-Time Genome Data Analysis. Proceedings of the 2nd International Conference on Global Health Challenges. bll. 5-10 (2013).
     
  • Schapranow, M.-P., Meinel, C., Plattner, H.: Datenbanktechnologie beflügelt personalisierte Medizin. Laborwelt Nr. 4/2012, 13. Jahrgang. (2012).
     
  • Plattner, H., Meinel, C., Schapranow, M.-P.: Blitzschnelle Datenanalysen für die personalisierte Medizin der Zukunft – Interdisziplinäre Impulse aus Potsdam und Berlin. Themenbroschüre 2012 Gesundheitsstandort Berlin-Brandenburg. (2012).
     
  • Müller, J., Schapranow, M.-P., Zeier, A., Plattner, H.: Secure RFID-Enablement in Modern Companies: A Case Study of the Pharmaceutical Industry. Handbook of Research on Industrial Informatics and Manufacturing Intelligence: Innovations and Solutions, pp. 507-539, IGI Global (2012).
     
  • Zeier, A., Plattner, H., Schapranow, M.-P., Müller, J.: Costs of Authentic Pharmaceuticals: Research on Qualitative and Quantitative Aspects of Enabling Anti-counterfeiting in RFID-aided Supply Chains. Personal and Ubiquitous Computing, Volume 16, Issue 3. 271-289 (2011).
     
  • Schapranow, M.-P., Fähnrich, C., Zeier, A., Plattner, H.: Simulation of RFID-aided Supply Chains: Case Study of the Pharmaceutical Supply Chain. Third International Conference on Computational Intelligence, Modelling and Simulation, pp. 340-345 (2011).
     
  • Schapranow, M.-P., Müller, J., Zeier, A., Plattner, H.: What are Authentic Pharmaceuticals Worth? Designing and Deploying RFID Applications, pp. 204-220, INTECH Press (2011).
     
  • Schapranow, M.-P., Müller, J., Zeier, A., Plattner, H.: What are Authentic Pharmaceuticals Worth? Designing and Deploying RFID Applications, pp. 204-220, INTECH Press (2011).
     
  • Schapranow, M.-P., Lorenz, M., Zeier, A., Plattner, H.: License-based Access Control in EPCglobal Networks. The 7th European Workshop on RFID Systems and Technologies, pp. 1-7 (2011).
     
  • Schapranow, M.-P., Zeier, A., Plattner, H., Müller, J., Lorenz, M.: Discovery Services in the EPC Network. Designing and Deploying RFID Applications, pp. 109-130, INTECH Press (2011).
     
  • Schapranow, M.-P., Zeier, A., Plattner, H.: Security Extensions for Improving Data Security of Event Repositories in EPCglobal Networks. The 9th International Conference on Embedded and Ubiquitous Computing pp. 213-220 (2011).
     
  • Schapranow, M.-P., Zeier, A., Plattner, H.: A Formal Model for Enabling RFID in Pharmaceutical Supply Chains. 44th Hawaii International Conference on System Sciences (HICSS). IEEE (2011).
     
  • Schapranow, M.-P., Zeier, A., Leupold, F., Schubotz, T.: Securing EPCglobal Object Name Service -- Privacy Enhancements for Anti-counterfeiting. 2nd International Conference on Intelligent Systems, Modeling and Simulation, pp. 332-337 (2011).
     
  • Lorenz, M., Müller, J., Schapranow, M.-P., Zeier, A.: A Distributed EPC Discovery Service based on Peer-to-peer Technology. Proceedings of the RFID SysTech 2011, 7th European Workshop on Smart Objects: Systems, Technologies and Applications, Dresden. bll. 1 - 7. VDE (2011).
     
  • Schapranow, M.-P., Müller, J., Zeier, A., Plattner, H.: RFID Event Data Processing -- An Architecture for Storing and Searching. Proceedings of the 4th International Workshop on RFID Technology - Concepts, Applications, Challenges, Funchal, Madeira, Portugal (2010).
     
  • Müller, J., Schapranow, M.-P., Pöpke, C., Urbat, M., Zeier, A., Plattner, H.: Best Practices for Rigorous Evaluation of RFID Software Components. Proceedings of the 6th European Workshop on RFID Systems and Technologies (RFID !SysTech'10), Ciudad Real, Spain (2010).
     
  • Plattner, H., Schapranow, M.-P., Müller, J., Zeier, A.: Sustainable Use of RFID Tags in the Pharmaceutical Industry. European Workshop on Smart Objects: Systems, Technologies and Applications, Ciudad Real, Spain (2010).
     
  • Schapranow, M.-P., Zeier, A., Plattner, H.: A Dynamic Mutual RFID Authentication Model Preventing Unauthorized Third Party Access. The 4th International Conference on Network and System Security, , pp. 371-376 (2010).
     
  • Schapranow, M.-P., Nagora, M., Zeier, A.: CoMoSeR: Cost Model for Security-Enhanced RFID-Aided Supply Chains. The 18th International Conference on Software, Telecommunication and Computer Networks, pp. 11-16 (2010).
     
  • Schapranow, M.-P., Kühne, R., Zeier, A.: Real-Time Billing in Smart Grid Infrastructures. Power and Energy Student Summit 2010 - Integration of Renewable Energies into the Grid (2010).
     
  • Schapranow, M.-P., Kühne, R., Zeier, A.: Enabling Real-Time Charging for Smart Grid Infrastructures using In-Memory Databases. 1st IEEE LCN Workshop on Smart Grid Networking Infrastructure (2010).
     
  • Schapranow, M.-P., Geller, F., Lorenz, M., Müller, J., Kowark, T., Zeier, A.: Assessment of Communication Protocols in the EPC Network: Replacing Textual SOAP and XML with Binary Google Protocol Buffers Encoding. 17th IEEE International Conference on Industrial Engineering and Engineering Management (IE&EM), Xiamen, China (2010).
     
  • Schapranow, M.-P., Müller, J., Krüger, J., Hofmann, P., Zeier, A.: Integration of RFID Technology is a Key Enabler for Demand-Driven Supply Network. The IUP Journal of Supply Chain Management, Volume 6, Nos. 3 & 4, pp. 57-74. (2009).
     
  • Schapranow, M.-P., Müller, J., Enderlein, S., Helmich, M., Zeier, A.: Low-Cost Mutual RFID Authentication Model Using Predefined Password Lists. The 16th International Conference on Industrial Engineering and Engineering Management, pp. 889-893 (2009).
     
  • Schapranow, M.-P., Krüger, J., Borovskiy, V., Zeier, A., Plattner, H.: Data Loading & Caching Strategies in Service-Oriented Enterprise Applications. Proceedings of IEEE Congress on Services (SERVICES 2009), Los Angeles, CA, USA (2009).
     
  • Schapranow, M.-P., Zeier, A., Borovskiy, V., Müller, J.: Binary Search Tree Visualization Algorithm. 16th International Conference on Industrial Engineering and Engineering Management (IE&EM), Beijing, China (2009).
     
  • Schapranow, M.-P., Müller, J., Zeier, A., Plattner, H.: Security Aspects in Vulnerable RFID-Aided Supply Chains. Proceedings of the 5th European Workshop on RFID Systems and Technologies, Bremen (2009).
     
  • Müller, J., Schapranow, M.-P., Helmich, M., Enderlein, S., Zeier, A.: RFID Middleware as a Service - Enabling Small and Medium-sized Enterprises to Participate in the EPC Network. 16th International Conference on Industrial Engineering and Engineering Management (IE&EM), Beijing, China (2009).
     
  • Zeier, A., Schapranow, M.-P., Krüger, J., Uflacker, M., Müller, J.: noFilis !CrossTalk 2.0 as Device Management Solution, Experiences while Integrating RFID Hardware into SAP Auto-ID Infrastructure. Proceedings of the 16th International Conference on Industrial Engineering and Engineering Management (IE&EM), Beijing, China (2009).
     
  • Borovskiy, V., Müller, J., Schapranow, M.-P., Zeier, A.: Ensuring Service Backwards Compatibility with Generic Web Services. Proceedings of ICSE 2009, PESOS Workshop, Vancouver, Canada (2009).
     
  • Müller, J., Faust, M., Schwalb, D., Schapranow, M.-P., Zeier, A., Plattner, H.: A Software as a Service RFID Middleware for Small and Medium-sized Enterprises. Proceedings of the 5th European Workshop on RFID Systems and Technologies (RFID !SysTech'09), Bremen, Germany (2009).
     
  • Schapranow, M.-P., Krüger, J., Müller, J.: Smart Enterprise Widgets: Little Helpers with a Big Impact. SAP INFO (online). (2008).
     
  • Grund, M., Schaffner, J., Schapranow, M.-P., Bog, A., Krüger, J.: Operational Reporting Using Navigational SQL. IEEE Symposium on Advanced Management of Information for Globalized Enterprises (AMIGE'08), Tianjin, China (2008).
     
  • Schapranow, M.-P., Krüger, J.: HPI Students Learn with SAP Enterprise Services. SAP INFO (online). (2008).
     
  • Krüger, J., Grund, M., Schaffner, J., Schapranow, M.-P., Bog, A.: Shared Table Access Pattern Analysis for Multi-Tenant Applications. IEEE Symposium on Advanced Management of Information for Globalized Enterprises (AMIGE'08), Tianjin, China (2008).
     
  • Schapranow, M.-P., Grund, M., Krüger, J., Schaffner, J., Bog, A.: Combining Advantages - Unified Data Stores in Global Enterprises. IEEE Symposium on Advanced Management of Information for Globalized Enterprises (AMIGE'08), Tianjin, China (2008).
     

Master's Thesis

Miscellaneous